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ScienceSoftware :: Bioinformatics :: Genetics :: Array Designer 4

Array Designer 4 #304

Array Designer: Microarray Software to design highly specific oligos for microarrays

Oligo & cDNA Microarray Design Software
Array Designer designs thousands of primers and probes for oligo and cDNA microarrays in seconds. It designs probes for SNP detection, microarray gene expression and gene expression profiling. In addition, comprehensive support for tiling arrays and resequencing arrays is available.

Array Designer Home

Array Designer Features

Array Designer Quick Slideshow

-SNP Detection & SNP Genotyping

-Gene Expression Profiling

-Whole Genome Arrays

-Tiling Arrays

-Resequencing Arrays

-Microarray Technology

BLAST Search for Specific Design

Array Designer designs highly specific oligos by interpreting the results of a BLAST search performed against any genomic database available at NCBI or a local custom database. Any significant homologies identified are automatically avoided while designing oligos. Repeat regions are identified and automatically avoided.

Standard Array Design: You can design primers and probes for SNP detection and gene expression profiling on multiple sequences in a single search run. Our customers, typically choose over 10,000 sequences at a time.

Whole Genome Array: With Array Designer you can study the genetic make-up of entire organisms effortlessly by detecting every gene or exon in the whole genome. This enables easy discovery of differentially and alternatively spliced transcripts, SNPs, DNA sequence variation in individuals or populations and comparative genome hybridization (CGH).

Tiling Arrays: You can spot every base of a long genomic sequence also known as whole genome amplification, avoiding repetitive regions. Designing arrays to characterize regulatory elements, or to study epigenetic modifications, methylation patterns and protein binding sites has never been so easy.

Resequencing Arrays: Array Designer designs resequencing arrays with which you can detect SNP and other sequence variations in a large number of samples. One of the common problems in resequencing array design is false base calls caused by inter-template cross hybridization. With the unique feature which we call project BLAST, you can identify and avoid the homologous regions that create false positives.

and much more...

Design Highly Specific Oligos
To ensure specific amplification and exact detection, Array Designer designs highly specific PCR primers and oligos by automatically avoiding regions of significant cross homologies identified during a BLAST search against a private local database or the genomic public databases available at NCBI. For a whole genome sequence, Array Designer automatically creates a local custom database of the input sequence and BLAST searches every fragment against it. To verify the specificity of design, you can BLAST the designed oligos.

Beyond NCBI Database Support
When working with confidential or publicly unavailable sequences, you can set up a local database either on a Unix based server for institution-wide access or on a PC for your own convenience.

If you are interested to check out Array Designer's functions by yourself, download a
Demo Version of Array Designer here:

Demo for Windows

Demo for Linux

System Requirements

For Windows

Required

Recommended

CPU	Pentium III	Pentium IV
RAM	256 MB of available RAM	512 MB of available RAM
Hard Disk Drive Space	500 MB of available hard disk	1 GB of available hard disk
Screen Resolution	800 X 600	1024 X 768

Platforms supported for Windows: 98/2000/ME/XP/Vista

For Linux†

Required

Recommended

CPU	Pentium III	Pentium IV
RAM	256 MB of available RAM	512 MB of available RAM
Hard Disk Drive Space	500 MB of available hard disk	1 GB of available hard disk
Screen Resolution	800 X 600	1024 X 768

† Tested on Red Hat Linux 9.0

Pricing

Array Designer Pricing & Packages

License Type	Commercial	Academic
Single User License	$ 4.185,00 NOW $ 3.975,75	Contact Us!
4 thru 9 User License	Contact Us!	Under Request

NOTE: If you want to purchase Academic License(s) or <3 Licenses with Volume Discount please contact us!

Details

Price: $3,975.75 (€ 3,578.18)

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